HEMCO
HEMCO Standalone User Guide
Introduction to the HEMCO Standalone
Obtain the required hardware
Install required software libraries
Configure your login environment
Download the source code
Create a run directory
Build the executable
Configure a simulation
Download input data
Run a simulation
HEMCO Reference Guide
Introduction to HEMCO
Basic examples
The HEMCO configuration file
HEMCO extensions
Units in HEMCO
HEMCO diagnostics
More configuration examples
HEMCO under the hood
Input file format
Coupling HEMCO to other models
Key References
Supplemental Guides
Load software into your environment
Build required software with Spack
Understand what error messages mean
Debug GEOS-Chem and HEMCO errors
GEOS-Chem Input Data on AWS cloud
Additional portals for meteorology data
Manage a data archive with bashdatacatalog
Parallelize GEOS-Chem and HEMCO source code
Work with netCDF files
Prepare COARDS-compliant netCDF files
View related documentation
Help and Reference
HEMCO version history
Known bugs and issues
Contributing Guidelines
Support Guidelines
Editing this User Guide
HEMCO
Index
Index
Symbols
|
A
|
B
|
C
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
Y
Symbols
!$OMP
command line option
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
$HOME
$PATH
${HOME}
,
[1]
0.125x0.15625
command line option
0.25x0.3125
command line option
0.5x0.625
command line option
2.0x2.5
command line option
4
command line option
4.0x5.0
command line option
40
command line option
47
command line option
72
command line option
A
A
command line option
absolute_threshold
command line option
aerosol
command line option
all
command line option
allow_homogeneous_NAT
command line option
B
B
command line option
Box
buffer_zone_NSEW
command line option
C
C
command line option
calc_strat_aod
command line option
carbon
command line option
CC
center_at_180
command line option
cloud_overlap_correlation
command line option
cloud_scheme_flag
command line option
cloudj_input_dir
command line option
CO2_level
command line option
command line option
!$OMP
,
[1]
,
[2]
,
[3]
,
[4]
,
[5]
0.125x0.15625
0.25x0.3125
0.5x0.625
2.0x2.5
4
4.0x5.0
40
47
72
A
absolute_threshold
aerosol
all
allow_homogeneous_NAT
B
buffer_zone_NSEW
C
calc_strat_aod
carbon
center_at_180
cloud_overlap_correlation
cloud_scheme_flag
cloudj_input_dir
CO2_level
CS
CY
CYS
E
EC
ECF
EF
EFYO
EY
fastjx_input_dir
fill_negative_values
fullchem
GCAP2
GEOS-FP
GEOS-IT
gregorian
het_chem
Hg
hydrophilic
hydrophobic
I
input_dir
J
KPP/carbon
KPP/custom
KPP/fullchem
KPP/Hg
lat:axis
lat:long_name
lat:units
lev:axis
lev:long_name
lev:positive
lev:units
lon:axis
lon:long_name
lon:units
MERRA2
metals
min_top_inserted_cloud_OD
module
,
[1]
,
[2]
,
[3]
,
[4]
NIT_Jscale
NITs_Jscale
no2
num_cloud_overlap_blocks
num_levs_with_cloud
num_wavelength_bins
oh_tuning_factor
on_cores
opt_depth_increase_factor
percent_channel_A_HONO
percent_channel_B_HO2
POPs
R
RA
range
,
[1]
reference_CO2_level
RF
RFY
RFY3
root
RY
scale_by_pressure
sphere_correction
standard
supersat_factor_req_for_ice_nucl
tagO3
time:axis
time:calendar
time:long_name
time:units
TransportTracers
use_column_O3_from_met
use_H2O_UV_absorption
use_halfpolar_boxes
use_linoz_for_O3
use_online_O3_from_model
use_static_bnd_cond
use_target_threshold
use_TOMS_SBUV_O3
verbose
CS
command line option
CXX
CY
command line option
CYS
command line option
E
E
command line option
EC
command line option
ECF
command line option
EF
command line option
EFYO
command line option
Emission year
,
[1]
,
[2]
,
[3]
,
[4]
environment variable
$HOME
$PATH
${HOME}
,
[1]
Box
CC
CXX
Emission year
,
[1]
,
[2]
,
[3]
,
[4]
FC
GC_DATA_ROOT
icc
icpc
model
O
OMP_NUM_THREADS
OMP_STACKSIZE
scope_args
,
[1]
scope_dir
SPACK_ROOT
,
[1]
use_target_threshold:activate
Y
EY
command line option
F
fastjx_input_dir
command line option
FC
fill_negative_values
command line option
fullchem
command line option
G
GC_DATA_ROOT
GCAP2
command line option
GEOS-FP
command line option
GEOS-IT
command line option
gregorian
command line option
H
het_chem
command line option
Hg
command line option
hydrophilic
command line option
hydrophobic
command line option
I
I
command line option
icc
icpc
input_dir
command line option
J
J
command line option
K
KPP/carbon
command line option
KPP/custom
command line option
KPP/fullchem
command line option
KPP/Hg
command line option
L
lat:axis
command line option
lat:long_name
command line option
lat:units
command line option
lev:axis
command line option
lev:long_name
command line option
lev:positive
command line option
lev:units
command line option
lon:axis
command line option
lon:long_name
command line option
lon:units
command line option
M
MERRA2
command line option
metals
command line option
min_top_inserted_cloud_OD
command line option
model
module
command line option
,
[1]
,
[2]
,
[3]
,
[4]
N
NIT_Jscale
command line option
NITs_Jscale
command line option
no2
command line option
num_cloud_overlap_blocks
command line option
num_levs_with_cloud
command line option
num_wavelength_bins
command line option
O
O
oh_tuning_factor
command line option
OMP_NUM_THREADS
OMP_STACKSIZE
on_cores
command line option
opt_depth_increase_factor
command line option
P
percent_channel_A_HONO
command line option
percent_channel_B_HO2
command line option
POPs
command line option
R
R
command line option
RA
command line option
range
command line option
,
[1]
reference_CO2_level
command line option
RF
command line option
RFY
command line option
RFY3
command line option
root
command line option
RY
command line option
S
scale_by_pressure
command line option
scope_args
,
[1]
scope_dir
SPACK_ROOT
,
[1]
sphere_correction
command line option
standard
command line option
supersat_factor_req_for_ice_nucl
command line option
T
tagO3
command line option
time:axis
command line option
time:calendar
command line option
time:long_name
command line option
time:units
command line option
TransportTracers
command line option
U
use_column_O3_from_met
command line option
use_H2O_UV_absorption
command line option
use_halfpolar_boxes
command line option
use_linoz_for_O3
command line option
use_online_O3_from_model
command line option
use_static_bnd_cond
command line option
use_target_threshold
command line option
use_target_threshold:activate
use_TOMS_SBUV_O3
command line option
V
verbose
command line option
Y
Y